Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
PDB ID | HET | Uniprot Name | EC Number |
---|---|---|---|
2x9v | TMQ | Pteridine reductase |
PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
---|---|---|---|---|---|
2x9v | TMQ | Pteridine reductase | / | 0.970 | |
4y8v | ADP | Acyl-CoA synthetase (NDP forming) | / | 0.744 | |
1e7w | MTX | Pteridine reductase 1 | 1.5.1.33 | 0.725 | |
2qhx | FE1 | Pteridine reductase 1 | 1.5.1.33 | 0.715 | |
1mxf | MTX | Putative pteridine reductase 2 | / | 0.695 | |
3bmc | FOL | Pteridine reductase | / | 0.668 |