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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2x7d EGB Kinesin-like protein KIF11

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2x7d EGBKinesin-like protein KIF11 / 0.969
2x7c KZ9Kinesin-like protein KIF11 / 0.846
1q0b NATKinesin-like protein KIF11 / 0.791
1x88 NATKinesin-like protein KIF11 / 0.788
2ieh MOYKinesin-like protein KIF11 / 0.760
3k3b L31Kinesin-like protein KIF11 / 0.732
2fme 3QCKinesin-like protein KIF11 / 0.717
2x2r X2OKinesin-like protein KIF11 / 0.692
2wog ZZDKinesin-like protein KIF11 / 0.686
3k5e K5EKinesin-like protein KIF11 / 0.668
2x7e X7EKinesin-like protein KIF11 / 0.657
3ken ZZDKinesin-like protein KIF11 / 0.651