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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2x60 GTP Mannose-1-phosphate guanylyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2x60 GTPMannose-1-phosphate guanylyltransferase / 1.258
3pkp DTPGlucose-1-phosphate thymidylyltransferase 2.7.7.24 0.725
3pkq DGTGlucose-1-phosphate thymidylyltransferase 2.7.7.24 0.705
2x5z GDDMannose-1-phosphate guanylyltransferase / 0.692
2zu8 GDDMannosyl-3-phosphoglycerate synthase 2.4.1.217 0.677
3se5 ANPAdenosine monophosphate-protein transferase NmFic 2.7.7.n1 0.677
4k41 ATPActin, alpha skeletal muscle / 0.677
3zcb ATPAdenosine monophosphate-protein transferase VbhT 2.7.7.n1 0.674
5bsm ATP4-coumarate--CoA ligase 2 6.2.1.12 0.674
2cvv ANPRibonucleoside-diphosphate reductase large chain 1 1.17.4.1 0.673
2y6p CTP3-deoxy-manno-octulosonate cytidylyltransferase 2.7.7.38 0.673
1atn ATPActin, alpha skeletal muscle / 0.671
4g3p UD1Bifunctional protein GlmU / 0.671
3onw GDPGuanine nucleotide-binding protein G(i) subunit alpha-1 / 0.670
1kxp ATPActin, alpha skeletal muscle / 0.669
4fh5 UTPTerminal uridylyltransferase cid1 / 0.667
1kp8 AGS60 kDa chaperonin / 0.666
2a41 ATPActin, alpha skeletal muscle / 0.666
3w3d ATPActin, gamma-enteric smooth muscle / 0.664
4cbx ATPActin-2 / 0.663
4qm6 GTPMetallophosphoesterase / 0.662
1lot ATPActin, alpha skeletal muscle / 0.660
3a5o ATPMajor actin / 0.659
1zxm ANPDNA topoisomerase 2-alpha 5.99.1.3 0.658
1eqy ATPActin, alpha skeletal muscle / 0.657
2wvm GDDMannosyl-3-phosphogylcerate synthase / 0.657
2q36 ATPActin, alpha skeletal muscle / 0.656
1t44 ATPActin, alpha skeletal muscle / 0.655
3ffk ATPActin, alpha skeletal muscle / 0.655
3zlm ANPAdenosine monophosphate-protein transferase NmFic 2.7.7.n1 0.655
1i58 ACPChemotaxis protein CheA 2.7.13.3 0.652
1rgi ATPActin, alpha skeletal muscle / 0.652