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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2x3f APC Pantothenate synthetase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2x3f APCPantothenate synthetase / 1.146
3coz 54HPantothenate synthetase 6.3.2.1 0.782
3coy 53HPantothenate synthetase 6.3.2.1 0.762
3ag6 PAJPantothenate synthetase / 0.761
3cow 52HPantothenate synthetase 6.3.2.1 0.747
3iob A4DPantothenate synthetase 6.3.2.1 0.725
3ioe A7DPantothenate synthetase 6.3.2.1 0.723
1n2i PAJPantothenate synthetase 6.3.2.1 0.721
3iod A6DPantothenate synthetase 6.3.2.1 0.718
3qtt ANPPantothenate synthetase / 0.696
3kt3 TYMTryptophan--tRNA ligase, cytoplasmic 6.1.1.2 0.689
1n2g APCPantothenate synthetase 6.3.2.1 0.686
1gtr ATPGlutamine--tRNA ligase 6.1.1.18 0.681
5hg0 SAMPantothenate synthetase / 0.681
2a84 ATPPantothenate synthetase 6.3.2.1 0.679
1n2e APCPantothenate synthetase 6.3.2.1 0.658