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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2x1e X1E Acyl-coenzyme A:6-aminopenicillanic-acid-acyltransferase 40 kDa form 2.3.1.164

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2x1e X1EAcyl-coenzyme A:6-aminopenicillanic-acid-acyltransferase 40 kDa form 2.3.1.164 0.950
1tsv UMPThymidylate synthase / 0.675
4nhm UN9Prolyl 3,4-dihydroxylase TPA1 1.14.11 0.670
3uce NDPDehydrogenase / 0.666
3g49 NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.654
4koy CSCUncharacterized protein / 0.651