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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2wuf KEM 4,5:9,10-diseco-3-hydroxy-5,9,17-trioxoandrosta-1(10),2-diene-4-oate hydrolase 3.7.1.17

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2wuf KEM4,5:9,10-diseco-3-hydroxy-5,9,17-trioxoandrosta-1(10),2-diene-4-oate hydrolase 3.7.1.17 0.926
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.665
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.660
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2puc GUNHTH-type transcriptional repressor PurR / 0.660
4e5i 0N9Polymerase acidic protein / 0.660
4e5l DBHPolymerase acidic protein / 0.660
2wug HPK4,5:9,10-diseco-3-hydroxy-5,9,17-trioxoandrosta-1(10),2-diene-4-oate hydrolase 3.7.1.17 0.659
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.656
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.655
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.653
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.653
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.651
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.650