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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2wsi FAD FAD synthase 2.7.7.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2wsi FADFAD synthase 2.7.7.2 1.316
2qmm SAMtRNA (pseudouridine(54)-N(1))-methyltransferase / 0.665
2ek2 SAHDiphthine synthase / 0.663
3o7b SAHRibosomal RNA small subunit methyltransferase Nep1 / 0.661
4cnf MTASpoU rRNA methylase / 0.657
2io9 ADPBifunctional glutathionylspermidine synthetase/amidase / 0.652