sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2wpw | ACO | Orf14 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 2wpw | ACO | Orf14 | / | 1.174 | |
| 2wpx | ACO | Orf14 | / | 0.978 | |
| 1bo4 | COA | Aminoglycoside-(3)-N-acetyltransferase | / | 0.701 | |
| 2q4v | ACO | Diamine acetyltransferase 2 | 2.3.1.57 | 0.684 | |
| 4kub | COA | Uncharacterized protein | / | 0.682 | |
| 2bei | ACO | Diamine acetyltransferase 2 | 2.3.1.57 | 0.678 | |
| 2jdd | ACO | Probable acetyltransferase | / | 0.671 | |
| 2c27 | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.662 | |
| 1wwz | ACO | Uncharacterized protein | / | 0.660 | |
| 2psw | COA | N-alpha-acetyltransferase 50 | / | 0.660 | |
| 4u9v | ACO | N-alpha-acetyltransferase 40 | 2.3.1 | 0.658 | |
| 4xnh | ACO | N-terminal acetyltransferase A complex subunit NAT5 | 2.3.1 | 0.657 | |
| 4ava | ACO | Acetyltransferase Pat | 2.3.1 | 0.654 | |
| 4qvt | ACO | Acetyltransferase YpeA | 2.3.1 | 0.654 | |
| 1bob | ACO | Histone acetyltransferase type B catalytic subunit | / | 0.651 | |
| 1s5k | COA | Aminoglycoside N(6')-acetyltransferase type 1 | / | 0.650 | |
| 3bj7 | COA | Diamine acetyltransferase 1 | / | 0.650 | |
| 3tfy | COA | N-alpha-acetyltransferase 50 | 2.3.1 | 0.650 |