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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2wow NDP Trypanothione reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2wow NDPTrypanothione reductase / 1.217
2zzc NAPThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.778
1lqu NDPNADPH-ferredoxin reductase FprA 1.18.1.2 0.773
2w0h NDPTrypanothione reductase / 0.771
3ean NAPThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.767
2wba NDPTrypanothione reductase 1.8.1.12 0.763
1geu NADGlutathione reductase 1.8.1.7 0.735
1typ NAPTrypanothione reductase 1.8.1.12 0.730
2q0l NAPThioredoxin reductase 1.8.1.9 0.726
2npx NADNADH peroxidase 1.11.1.1 0.721
4b65 NDPL-ornithine N(5)-monooxygenase / 0.720
3cge NDPCoenzyme A disulfide reductase / 0.717
4ovi N01Phenylacetone monooxygenase 1.14.13.92 0.712
2rab NADGlutathione amide reductase / 0.700
3cgd NADCoenzyme A disulfide reductase / 0.697
3lzw NAPFerredoxin--NADP reductase 2 1.18.1.2 0.695
4b68 NAPL-ornithine N(5)-monooxygenase / 0.689
4d04 NAPPhenylacetone monooxygenase 1.14.13.92 0.679
1e1k NAPNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.676
3uoz NAP2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.674
4h50 NAPBiphenyl dioxygenase ferredoxin reductase subunit / 0.672
2c3c NAP2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.668
4b66 NAPL-ornithine N(5)-monooxygenase / 0.667
4ccq NAPThioredoxin reductase / 0.662
4b63 NAPL-ornithine N(5)-monooxygenase / 0.660
4h4w NAPBiphenyl dioxygenase ferredoxin reductase subunit / 0.660
1n2e APCPantothenate synthetase 6.3.2.1 0.659
4h4u NDPBiphenyl dioxygenase ferredoxin reductase subunit / 0.657
4z54 GDPNeuronal-specific septin-3 / 0.657
1e1l NAPNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.655
1qmg APXKetol-acid reductoisomerase, chloroplastic 1.1.1.86 0.655
2ym1 NAPPhenylacetone monooxygenase 1.14.13.92 0.655
1n7g NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.654
4c77 N01Phenylacetone monooxygenase 1.14.13.92 0.654
3au2 DGTDNA polymerase beta family (X family) / 0.652
1n2g APCPantothenate synthetase 6.3.2.1 0.651
2ylr NAPPhenylacetone monooxygenase 1.14.13.92 0.651
2ylx NAPPhenylacetone monooxygenase 1.14.13.92 0.650