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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2woa 576 Macrophage metalloelastase 3.4.24.65

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2woa 576Macrophage metalloelastase 3.4.24.65 0.935
4guy KLJMacrophage metalloelastase 3.4.24.65 0.768
2wo8 077Macrophage metalloelastase 3.4.24.65 0.767
4h76 10BMacrophage metalloelastase 3.4.24.65 0.729
2hu6 37AMacrophage metalloelastase 3.4.24.65 0.712
1hv5 RXPStromelysin-3 3.4.24 0.702
3ts4 EEGMacrophage metalloelastase 3.4.24.65 0.702
2wo9 068Macrophage metalloelastase 3.4.24.65 0.686
1hy7 MBSStromelysin-1 3.4.24.17 0.679
4h49 L29Macrophage metalloelastase 3.4.24.65 0.679
3tsk QEGMacrophage metalloelastase 3.4.24.65 0.677
2d1o FA4Stromelysin-1 3.4.24.17 0.673
1c8t TR1Stromelysin-1 3.4.24.17 0.667
4i03 L88Macrophage metalloelastase 3.4.24.65 0.667
4ja1 NGHStromelysin-1 3.4.24.17 0.666
3elm 24FCollagenase 3 3.4.24 0.659
3lik EEGMacrophage metalloelastase 3.4.24.65 0.655
3oho Z79Stromelysin-1 3.4.24.17 0.654
1bzs BSINeutrophil collagenase 3.4.24.34 0.653
4g9l NGHStromelysin-1 3.4.24.17 0.653
1d8m BBHStromelysin-1 3.4.24.17 0.651