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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2wky IBC Glutamate receptor ionotropic, kainate 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2wky IBCGlutamate receptor ionotropic, kainate 1 / 1.069
3s2v 3HUGlutamate receptor ionotropic, kainate 1 / 0.816
4dld TZGGlutamate receptor ionotropic, kainate 1 / 0.788
3rt8 CWDGlutamate receptor 3 / 0.771
2xxv KAIGlutamate receptor ionotropic, kainate 2 / 0.766
2pbw DOQGlutamate receptor ionotropic, kainate 1 / 0.761
1fw0 KAIGlutamate receptor 2 / 0.754
4bdr KAIGlutamate receptor ionotropic, kainate 2 / 0.751
3tza TZGGlutamate receptor 2 / 0.749
4bdo KAIGlutamate receptor ionotropic, kainate 2 / 0.745
4f3g KAIGlutamate receptor 3 / 0.744
1lbb KAIGlutamate receptor 2 / 0.739
3kfm KAIGlutamate receptor 4 / 0.738
2qs4 LY5Glutamate receptor ionotropic, kainate 1 / 0.728
4f31 KAIGlutamate receptor 3 / 0.723
2xxy KAIGlutamate receptor ionotropic, kainate 2 / 0.718
3c35 KAIGlutamate receptor ionotropic, kainate 1 / 0.705
2qs1 UB1Glutamate receptor ionotropic, kainate 1 / 0.701
4gxs 0YSGlutamate receptor 2 / 0.698
5iot UMPFlavin-dependent thymidylate synthase 2.1.1.148 0.670
3c36 KAIGlutamate receptor ionotropic, kainate 1 / 0.666
3t7s SAMUncharacterized protein / 0.666
4i9h 1E4L-lactate dehydrogenase A chain 1.1.1.27 0.653