Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2wkm PFY Hepatocyte growth factor receptor 2.7.10.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2wkm PFYHepatocyte growth factor receptor 2.7.10.1 1.138
3g0e B49Mast/stem cell growth factor receptor Kit 2.7.10.1 0.691
2c3k ABOSerine/threonine-protein kinase Chk1 2.7.11.1 0.663
2jam J60Calcium/calmodulin-dependent protein kinase type 1G 2.7.11.17 0.657
2pe0 39Z3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.653