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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2wdz NAD Galactitol dehydrogenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
2wdz NADGalactitol dehydrogenase / 1.204
2wsb NADGalactitol dehydrogenase / 0.939
2p5y NADUDP-glucose 4-epimerase / 0.874
4j7x NAPSepiapterin reductase 1.1.1.153 0.870
1e3s NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.865
5ig2 NADShort-chain dehydrogenase/reductase SDR / 0.863
1geg NADDiacetyl reductase [(S)-acetoin forming] 1.1.1.304 0.851
5jsf NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.851
2d1y NADOxidoreductase, short-chain dehydrogenase/reductase family / 0.849
2q1w NADPutative nucleotide sugar epimerase/ dehydratase / 0.847
4z3d NDPCarbonyl reductase [NADPH] 1 1.1.1.184 0.843
4nbt NAD3-oxoacyl-[acyl-carrier-protein] reductase / 0.832
4qec NAPElxO / 0.830
3lu1 NADUDP-N-acetylglucosamine 4-epimerase / 0.829
3ruc NADUDP-N-acetylglucosamine 4-epimerase / 0.823
5lc1 NADL-threonine 3-dehydrogenase / 0.818
3ak4 NADNADH-dependent quinuclidinone reductase / 0.815
5js6 NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.814
1cyd NDPCarbonyl reductase [NADPH] 2 1.1.1.184 0.812
4c7k NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.811
1n5d NDPCarbonyl reductase [NADPH] 1 / 0.810
1xse NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.810
1edo NAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic 1.1.1.100 0.809
3rj5 NADAlcohol dehydrogenase 1.1.1.1 0.809
4is3 NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 2 1.17.98.1 0.809
2hun NAD336aa long hypothetical dTDP-glucose 4,6-dehydratase / 0.808
2dte NAIGlucose 1-dehydrogenase related protein / 0.807
1rwb NADGlucose 1-dehydrogenase 1.1.1.47 0.806
1nff NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.805
3rua NADUDP-N-acetylglucosamine 4-epimerase / 0.805
4dc0 NDPPutative ketoacyl reductase 1.3.1 0.803
2o23 NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.797
4cql NADEstradiol 17-beta-dehydrogenase 8 1.1.1.62 0.797
3ruf NADUDP-N-acetylglucosamine 4-epimerase / 0.796
2c59 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.791
4fn4 NADShort chain dehydrogenase / 0.791
3aw9 NADNAD-dependent epimerase/dehydratase / 0.790
3d3w NAPL-xylulose reductase 1.1.1.10 0.790
4wec NADShort chain dehydrogenase / 0.790
2q2q NADBeta-D-hydroxybutyrate dehydrogenase / 0.789
1w4z NAPPutative ketoacyl reductase 1.3.1 0.788
1zem NADXylitol dehydrogenase / 0.788
3rku NAPNADP-dependent 3-hydroxy acid dehydrogenase / 0.788
2c54 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.787
3a28 NADL-2,3-butanediol dehydrogenase 1.1.1.76 0.787
4b79 NADProbable short-chain dehydrogenase / 0.787
1h5q NAPNADP-dependent mannitol dehydrogenase 1.1.1.138 0.785
3nug NADPyridoxal 4-dehydrogenase 1.1.1.107 0.784
1xkq NDPUncharacterized protein / 0.783
2c29 NAPDihydroflavonol 4-reductase / 0.783
3geg NADShort-chain dehydrogenase/reductase SDR / 0.779
3w8f NAD3-hydroxybutyrate dehydrogenase / 0.779
3wds NADNADH-dependent quinuclidinone reductase / 0.778
1pr9 NAPL-xylulose reductase 1.1.1.10 0.777
3ko8 NADNAD-dependent epimerase/dehydratase / 0.777
3ruh NADUDP-N-acetylglucosamine 4-epimerase / 0.777
3tsc NADUncharacterized protein / 0.777
1nfr NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.776
2yy7 NADL-threonine dehydrogenase / 0.775
1x7h NDPPutative ketoacyl reductase 1.3.1 0.772
4nbw NADShort-chain dehydrogenase/reductase SDR / 0.772
4hwk NAPSepiapterin reductase 1.1.1.153 0.771
1x7g NAPPutative ketoacyl reductase 1.3.1 0.770
3bhi NAPCarbonyl reductase [NADPH] 1 1.1.1.184 0.770
3icp NADNAD-dependent epimerase/dehydratase / 0.770
1u7t TDT3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.769
3sx2 NADUncharacterized protein / 0.769
4dbz NDPPutative ketoacyl reductase 1.3.1 0.769
4dmm NAP3-oxoacyl-[acyl-carrier-protein] reductase / 0.769
2bfo NDPPteridine reductase 1 1.5.1.33 0.768
2ztu NADD(-)-3-hydroxybutyrate dehydrogenase / 0.768
4j7u NAPSepiapterin reductase 1.1.1.153 0.766
1gee NADGlucose 1-dehydrogenase 1.1.1.47 0.764
3bmo NAPPteridine reductase / 0.762
3qwf NAP17beta-hydroxysteroid dehydrogenase / 0.762
4o0l NDPNADPH-dependent 3-quinuclidinone reductase / 0.762
1e6w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.761
3o26 NDPSalutaridine reductase / 0.761
3s55 NADPutative short-chain dehydrogenase/reductase / 0.761
2ag5 NAD3-hydroxybutyrate dehydrogenase type 2 / 0.759
3lqf NADGalactitol dehydrogenase / 0.758
2p5u NADUDP-glucose 4-epimerase / 0.757
1u7t NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.756
2bgm NAJSecoisolariciresinol dehydrogenase 1.1.1.331 0.755
4qed NAPElxO / 0.755
5jla NADPutative short-chain dehydrogenase/reductase / 0.755
1sny NAPLD36273p / 0.753
4pvd NDPNADPH-dependent methylglyoxal reductase GRE2 / 0.753
4yr9 NADL-threonine 3-dehydrogenase, mitochondrial 1.1.1.103 0.753
1mg5 NAIAlcohol dehydrogenase 1.1.1.1 0.752
1vl8 NAPOxidoreductase, short chain dehydrogenase/reductase family / 0.751
3rud NADUDP-N-acetylglucosamine 4-epimerase / 0.751
4i5e NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.751
3vdq NAD3-hydroxybutyrate dehydrogenase / 0.750
1gco NADGlucose 1-dehydrogenase 1.1.1.47 0.748
1bxk NADdTDP-glucose 4,6-dehydratase 2 / 0.747
2ztv NADD(-)-3-hydroxybutyrate dehydrogenase / 0.746
2gdz NAD15-hydroxyprostaglandin dehydrogenase [NAD(+)] 1.1.1.141 0.745
3qrw NDPPutative ketoacyl reductase 1.3.1 0.745
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.744
3r3s NADPutative oxidoreductase / 0.744
4dc1 NDPPutative ketoacyl reductase 1.3.1 0.744
1xg5 NAPDehydrogenase/reductase SDR family member 11 / 0.743
2y99 NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase 1.3.1.56 0.742
3sju NDPKeto reductase / 0.742
3uce NDPDehydrogenase / 0.742
1g0n NDPTetrahydroxynaphthalene reductase 1.1.1.252 0.741
3g49 NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.741
4fj2 NAP17beta-hydroxysteroid dehydrogenase / 0.740
4kwh NAPReductase homolog / 0.738
1e3w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.737
2q1t NADPutative nucleotide sugar epimerase/ dehydratase / 0.737
3ndr NADPyridoxal 4-dehydrogenase 1.1.1.107 0.737
4fc7 NAPPeroxisomal 2,4-dienoyl-CoA reductase 1.3.1.34 0.737
3ru9 NADUDP-N-acetylglucosamine 4-epimerase / 0.736
4rf2 NAPNADPH dependent R-specific alcohol dehydrogenase / 0.736
3h4v NAPPteridine reductase 1 1.5.1.33 0.735
4gh5 NADShort-chain dehydrogenase/reductase SDR / 0.735
1g6k NADGlucose 1-dehydrogenase 1.1.1.47 0.734
2x6t NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.734
3pgx NADUncharacterized NAD-dependent oxidoreductase MAP_4146 / 0.734
3sxp NADADP-L-glycero-D-mannoheptose-6-epimerase / 0.734
3tn7 NJPShort-chain alcohol dehydrogenase / 0.732
4iqg NAPShort-chain dehydrogenase/reductase SDR / 0.730
1sby NADAlcohol dehydrogenase 1.1.1.1 0.727
4clo NAPPteridine reductase / 0.727
4fj0 NAP17beta-hydroxysteroid dehydrogenase / 0.727
3ru7 NADUDP-N-acetylglucosamine 4-epimerase / 0.726
3aut NAIGlucose 1-dehydrogenase 4 1.1.1.47 0.724
3w8d NAD3-hydroxybutyrate dehydrogenase / 0.724
4imp NDPPolyketide synthase extender modules 3-4 / 0.724
3rj9 NADAlcohol dehydrogenase 1.1.1.1 0.723
4b8z NAPGDP-L-fucose synthase 1.1.1.271 0.723
5cpb NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.723
5jyd NADShort chain dehydrogenase / 0.723
4twr NADNAD binding site:NAD-dependent epimerase/dehydratase:UDP-glucose 4-epimerase / 0.722
2hrb NAPCarbonyl reductase [NADPH] 3 1.1.1.184 0.720
4hp8 NAP2-deoxy-D-gluconate 3-dehydrogenase / 0.720
2dkn NAI3-alpha-hydroxysteroid dehydrogenase / 0.719
2ztl NADD(-)-3-hydroxybutyrate dehydrogenase / 0.719
2pzj NADPutative nucleotide sugar epimerase/ dehydratase / 0.718
4ej0 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.717
1b15 NAEAlcohol dehydrogenase 1.1.1.1 0.716
3ai2 NDPNADPH-sorbose reductase / 0.716
4u7w NDPMxaA / 0.716
3a4v NADNDP-sugar epimerase / 0.715
3o03 NAPDehydrogenase with different specificities (Related to short-chain alcohol dehydrogenase) / 0.714
5bt9 NAP3-oxoacyl-(Acyl-carrier-protein) reductase / 0.714
3rue NADUDP-N-acetylglucosamine 4-epimerase / 0.713
1b16 NAQAlcohol dehydrogenase 1.1.1.1 0.712
2zat NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.712
3sj7 NDP3-oxoacyl-(Acyl-carrier-protein) reductase, putative / 0.711
1i3l NADUDP-glucose 4-epimerase / 0.710
1qyv NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.710
2b69 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.710
4bmv NAPShort-chain dehydrogenase / 0.710
2pk3 A2RGDP-6-deoxy-D-mannose reductase / 0.709
2yut NAPPutative short-chain oxidoreductase / 0.707
1orr NADCDP-paratose 2-epimerase / 0.706
2ztm NADD(-)-3-hydroxybutyrate dehydrogenase / 0.706
1ae1 NAPTropinone reductase 1 / 0.704
1nah NADUDP-glucose 4-epimerase 5.1.3.2 0.703
3uxy NADShort-chain dehydrogenase/reductase SDR / 0.703
3ai3 NDPNADPH-sorbose reductase / 0.701
3w8e NAD3-hydroxybutyrate dehydrogenase / 0.700
2bd0 NAPSepiapterin reductase / 0.699
3mje NDPAmphB / 0.699
3p19 NDPPutative blue fluorescent protein / 0.699
1g1a NADdTDP-glucose 4,6-dehydratase / 0.697
4yag NAIC alpha-dehydrogenase / 0.697
1bdb NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase / 0.696
5jy1 NADPutative short-chain dehydrogenase/reductase / 0.696
1kvr NADUDP-glucose 4-epimerase 5.1.3.2 0.695
3a9w NADNDP-sugar epimerase / 0.695
2c20 NADUDP-glucose 4-epimerase / 0.694
3l77 NJPShort-chain alcohol dehydrogenase / 0.694
3of2 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.694
1nai NADUDP-glucose 4-epimerase 5.1.3.2 0.693
4bgi NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.693
3u4c NDPNADPH-dependent reductase BacG / 0.691
4eso NAPPutative oxidoreductase / 0.691
1w8d NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.690
2b35 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.690
3ijr NADOxidoreductase, short chain dehydrogenase/reductase family / 0.690
4k6f NAPPutative Acetoacetyl-CoA reductase / 0.690
4bii NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.689
2ieb ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.688
3ehe NADUDP-glucose 4-epimerase (GalE-1) / 0.688
1n2s NAIdTDP-4-dehydrorhamnose reductase 1.1.1.133 0.686
1oaa NAPSepiapterin reductase 1.1.1.153 0.686
1rpn NDPGDP-mannose 4,6-dehydratase / 0.685
2b4q NAPRhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.685
2jah NDPClavaldehyde dehydrogenase / 0.684
4nbu NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.684
4zju NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.684
3a1n NADNDP-sugar epimerase / 0.683
3oey NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.681
1b2l NDCAlcohol dehydrogenase 1.1.1.1 0.679
3oew NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.679
4bms NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.679
1p44 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.677
1rkx NADCDP-D-glucose-4,6-dehydratase / 0.676
3h2s NDPPutative NADH-flavin reductase / 0.676
1dir NADDihydropteridine reductase 1.5.1.34 0.674
3uic NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.674
2a94 AP0L-lactate dehydrogenase 1.1.1.27 0.673
2b37 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.673
2q2v NADBeta-D-hydroxybutyrate dehydrogenase / 0.673
4egb NADdTDP-glucose 4,6-dehydratase / 0.673
1n7g NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.672
2z1m NDPGDP-mannose 4,6-dehydratase / 0.672
3wmx NADNAD dependent epimerase/dehydratase / 0.672
4lis NADUDP-glucose 4-epimerase (Eurofung) / 0.670
1pzg A3DLactate dehydrogenase / 0.669
1f0y NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.668
2nv6 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.666
3ajr NADNDP-sugar epimerase / 0.666
3orf NADDihydropteridine reductase 1.5.1.34 0.666
1ipe NDPTropinone reductase 2 1.1.1.236 0.665
4idg NADPutative UDP-glucose 4-epimerase / 0.665
5b1y NDP3-oxoacyl-[acyl-carrier-protein] reductase / 0.665
1enp NADEnoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic 1.3.1.9 0.664
2ggs NDPdTDP-4-dehydrorhamnose reductase / 0.664
3pvz NADUDP-N-acetylglucosamine 4,6-dehydratase / 0.664
1fk8 NAD3-alpha-hydroxysteroid dehydrogenase/carbonyl reductase 1.1.1.50 0.663
1w73 NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.663
1iy8 NADLevodione reductase / 0.662
2ekp NAD2-deoxy-D-gluconate 3-dehydrogenase / 0.662
2wyv NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.662
2gn8 NAPUDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.661
4m55 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.661
1j5p NADL-aspartate dehydrogenase 1.4.1.21 0.658
2pr2 DG1Enoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.658
4bqp NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.658
1eny NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.657
1eq2 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.657
4iv8 SAMPhosphoethanolamine N-methyltransferase,putative / 0.656
5koi NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.656
1dhr NADDihydropteridine reductase 1.5.1.34 0.655
1enz NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.655
4dqu NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.655
4xd2 NAIAlcohol dehydrogenase E chain 1.1.1.1 0.655
2z95 NDPGDP-mannose 4,6-dehydratase / 0.653
3pef NAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase / 0.653
5d2e NAPMlnE / 0.653
1i2b NADUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.651
4dti NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.651
4gll NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.651