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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2wdq CBE Succinate dehydrogenase iron-sulfur subunit 1.3.5.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2wdq CBESuccinate dehydrogenase iron-sulfur subunit 1.3.5.1 0.878
2wdq CBESuccinate dehydrogenase cytochrome b556 subunit / 0.878
2wu2 CBESuccinate dehydrogenase iron-sulfur subunit 1.3.5.1 0.839
2wu2 CBESuccinate dehydrogenase cytochrome b556 subunit / 0.839
2wu5 CBESuccinate dehydrogenase iron-sulfur subunit 1.3.5.1 0.831
2wu5 CBESuccinate dehydrogenase cytochrome b556 subunit / 0.831
2wp9 CBESuccinate dehydrogenase iron-sulfur subunit 1.3.5.1 0.799
2wp9 CBESuccinate dehydrogenase cytochrome b556 subunit / 0.799
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2puc GUNHTH-type transcriptional repressor PurR / 0.660
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.660
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.659
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.658
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.658
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.657
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.656
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.655
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.654
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.653
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.652
4e5f 0N7Polymerase acidic protein / 0.651