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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2w5u FMN Flavodoxin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2w5u FMNFlavodoxin / 1.006
1fue FMNFlavodoxin / 0.814
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.799
2fcr FMNFlavodoxin / 0.792
4bmp FMNProtein NrdI / 0.791
1yob FMNFlavodoxin 2 / 0.788
1ahn FMNFlavodoxin 1 / 0.787
2bf4 FMNNADPH--cytochrome P450 reductase / 0.783
4bmo FMNProtein NrdI / 0.777
5tgz FMNCannabinoid receptor 1 / 0.751
3qfr FMNNADPH--cytochrome P450 reductase / 0.739
2v5v FMNFlavodoxin / 0.737
2bn4 FMNNADPH--cytochrome P450 reductase / 0.734
3ojx FMNNADPH--cytochrome P450 reductase / 0.734
3qe2 FMNNADPH--cytochrome P450 reductase / 0.733
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 0.732
4oxx FMNCindoxin / 0.732
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.726
1xyv FMNFlavodoxin / 0.720
1j8q FMNFlavodoxin / 0.716
3ojw FMNNADPH--cytochrome P450 reductase / 0.715
1wsb FMNFlavodoxin / 0.713
1amo FMNNADPH--cytochrome P450 reductase / 0.711
3n39 FMNProtein NrdI / 0.704
1aku FMNFlavodoxin / 0.702
3n3b FMNProtein NrdI / 0.702
3f6s FMNFlavodoxin / 0.701
1ja1 FMNNADPH--cytochrome P450 reductase / 0.694
1akr FMNFlavodoxin / 0.692
3esy FMNFlavodoxin / 0.691
4y7c FMNNADPH--cytochrome P450 reductase / 0.686
2fx2 FMNFlavodoxin / 0.684
4j8p FMNFlavodoxin / 0.681
1ofv FMNFlavodoxin / 0.680
3n3a FMNProtein NrdI / 0.676
1akw FMNFlavodoxin / 0.675
1c7f FMNFlavodoxin / 0.673
5xr8 FMNCannabinoid receptor 1 / 0.669
5f12 FMNNAD(P)H dehydrogenase (quinone) / 0.667
3e4v FMNUncharacterized protein / 0.666
5fx2 FMNFlavodoxin / 0.665
2ohi FMNType A flavoprotein FprA 1 0.664
2q9u FMNA-type flavoprotein / 0.664
1czn FMNFlavodoxin / 0.662
2ohh FMNType A flavoprotein FprA 1 0.662
4n65 FMNFMN-dependent NADH-azoreductase 1 / 0.662
1ycf FMNNitric oxide reductase 1 0.661
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.658
2v5u FMNFlavodoxin / 0.657
1j9g FMNFlavodoxin / 0.655
1j9z FMNNADPH--cytochrome P450 reductase / 0.654