Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2w1e L0E Aurora kinase A 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2w1e L0EAurora kinase A 2.7.11.1 0.873
2w1g L0GAurora kinase A 2.7.11.1 0.677
2w1f L0FAurora kinase A 2.7.11.1 0.670
3vid 4TTVascular endothelial growth factor receptor 2 2.7.10.1 0.662
2w1d L0DAurora kinase A 2.7.11.1 0.657