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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2w14 WR2 Snake venom metalloproteinase BaP1 3.4.24

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2w14 WR2Snake venom metalloproteinase BaP1 3.4.24 1.088
2w13 WR2Snake venom metalloproteinase BaP1 3.4.24 1.068
1gkc NFHMatrix metalloproteinase-9 3.4.24.35 0.826
3hy7 097A disintegrin and metalloproteinase with thrombospondin motifs 5 3.4.24 0.822
1rm8 BATMatrix metalloproteinase-16 3.4.24 0.815
2dw0 GM6Zinc metalloproteinase-disintegrin-like VAP2B 3.4.24 0.811
4dd8 BATDisintegrin and metalloproteinase domain-containing protein 8 3.4.24 0.787
1mnc PLHNeutrophil collagenase 3.4.24.34 0.784
2i47 INNDisintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.771
3kme INNDisintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.769
2jih 097A disintegrin and metalloproteinase with thrombospondin motifs 1 3.4.24 0.763
2wo8 023Macrophage metalloelastase 3.4.24.65 0.749
2wo9 023Macrophage metalloelastase 3.4.24.65 0.748
1jk3 BATMacrophage metalloelastase 3.4.24.65 0.746
1biw S80Stromelysin-1 3.4.24.17 0.739
2woa 023Macrophage metalloelastase 3.4.24.65 0.736
4pkw GM6Lethal factor 3.4.24.83 0.726
3kds NHXATP-dependent zinc metalloprotease FtsH / 0.720
4q4e BB2Aminopeptidase N 3.4.11.2 0.693
3m6p BB2Peptide deformylase 1B, chloroplastic/mitochondrial 3.5.1.88 0.689
4je7 BB2Peptide deformylase 1A, chloroplastic/mitochondrial 3.5.1.88 0.679
2i47 KGYDisintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.678
3l0t INNDisintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.675
4gr8 R4CMacrophage metalloelastase 3.4.24.65 0.668
4dpe NGHStromelysin-1 3.4.24.17 0.665
3m6r BB2Peptide deformylase 1B, chloroplastic/mitochondrial 3.5.1.88 0.663
3o2x 3O2Collagenase 3 3.4.24 0.661
1hv5 RXPStromelysin-3 3.4.24 0.658
2ow1 7MRMatrix metalloproteinase-9 3.4.24.35 0.657
2xs3 ALA_PHE_THR_SERKarilysin 3.4.24 0.651