Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2w13 WR2 Snake venom metalloproteinase BaP1 3.4.24

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2w13 WR2Snake venom metalloproteinase BaP1 3.4.24 1.073
2w14 WR2Snake venom metalloproteinase BaP1 3.4.24 1.068
1gkc NFHMatrix metalloproteinase-9 3.4.24.35 0.814
2dw0 GM6Zinc metalloproteinase-disintegrin-like VAP2B 3.4.24 0.813
3hy7 097A disintegrin and metalloproteinase with thrombospondin motifs 5 3.4.24 0.808
1rm8 BATMatrix metalloproteinase-16 3.4.24 0.799
4dd8 BATDisintegrin and metalloproteinase domain-containing protein 8 3.4.24 0.789
2i47 INNDisintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.787
1mnc PLHNeutrophil collagenase 3.4.24.34 0.785
3kme INNDisintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.770
2jih 097A disintegrin and metalloproteinase with thrombospondin motifs 1 3.4.24 0.764
1jk3 BATMacrophage metalloelastase 3.4.24.65 0.761
2wo8 023Macrophage metalloelastase 3.4.24.65 0.754
2wo9 023Macrophage metalloelastase 3.4.24.65 0.754
2woa 023Macrophage metalloelastase 3.4.24.65 0.748
1biw S80Stromelysin-1 3.4.24.17 0.721
4pkw GM6Lethal factor 3.4.24.83 0.717
3kds NHXATP-dependent zinc metalloprotease FtsH / 0.706
4q4e BB2Aminopeptidase N 3.4.11.2 0.694
3m6p BB2Peptide deformylase 1B, chloroplastic/mitochondrial 3.5.1.88 0.690
4je7 BB2Peptide deformylase 1A, chloroplastic/mitochondrial 3.5.1.88 0.681
3l0t INNDisintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.676
4dpe NGHStromelysin-1 3.4.24.17 0.666
3o2x 3O2Collagenase 3 3.4.24 0.662
2ow1 7MRMatrix metalloproteinase-9 3.4.24.35 0.656
4gr8 R4CMacrophage metalloelastase 3.4.24.65 0.652