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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2w02 ATP AcsD

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2w02 ATPAcsD / 1.201
2x3j ATPAcsD / 0.983
2x0q ATPAlcaligin biosynthesis protein / 0.878
2jlr ANPGenome polyprotein 3.4.21.91 0.693
4wb6 ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.683
1cxz GSPTransforming protein RhoA / 0.677
2py7 ATPPhosphoenolpyruvate carboxykinase (ATP) / 0.676
3fjq ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.676
2fju GSPRas-related C3 botulinum toxin substrate 1 / 0.670
3x2v ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.669
4lfi GNPCasein kinase II subunit alpha 2.7.11.1 0.669
4fi1 ATPCasein kinase II subunit alpha 2.7.11.1 0.668
1xts GTPGTP-binding protein Rheb / 0.664
3hu3 AGSTransitional endoplasmic reticulum ATPase 3.6.4.6 0.664
3idb ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.664
3kz1 GSPTransforming protein RhoA / 0.664
1svm ATPLarge T antigen 3.6.4 0.663
2qcs ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.663
4cei ANPATP-dependent helicase/deoxyribonuclease subunit B 3.1 0.663
4xvu ATPATPase GET3 / 0.662
4iac ACPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.661
2phk ATPPhosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform 2.7.11.19 0.660
3tkl GTPRas-related protein Rab-1A / 0.657
4dg3 ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.657
4dh7 ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.657
4nyi GNPGTPase HRas / 0.656
2w4k ADPDeath-associated protein kinase 1 2.7.11.1 0.655
3fhi ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.655
4xjx ATPType I restriction enzyme EcoR124II R protein 3.1.21.3 0.655
1a2b GSPTransforming protein RhoA / 0.654
1zao ATPRIO-type serine/threonine-protein kinase Rio2 2.7.11.1 0.654
2fg5 GNPRas-related protein Rab-31 / 0.653
4yal 2AMNADPH--cytochrome P450 reductase / 0.653
3hu1 AGSTransitional endoplasmic reticulum ATPase 3.6.4.6 0.652
4yau 2AMNADPH--cytochrome P450 reductase / 0.652
4y0x ADPSerine/threonine-protein kinase PknG 2.7.11.1 0.651
3wqu ATPCell division protein FtsA / 0.650