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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2vyx FMN Dodecin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2vyx FMNDodecin / 1.058
2v18 FMNDodecin / 0.799
2v19 FMNDodecin / 0.739
2vxa RBFDodecin / 0.715
4e2b FMNDehydrogenase / 0.713
4bf9 FMNtRNA-dihydrouridine(16) synthase / 0.707
4e2d FMNDehydrogenase / 0.700
3atz FMNProstaglandin F2a synthase / 0.695
4a3u FMNNADH:flavin oxidoreductase/NADH oxidase / 0.690
1z44 FMNNADPH dehydrogenase / 0.688
4tmb FMNOld yellow enzyme / 0.683
1bwk FMNNADPH dehydrogenase 1 1.6.99.1 0.682
5a8a FMNRiboflavin biosynthesis protein RibF 2.7.1.26 0.682
3gka FMNN-ethylmaleimide reductase / 0.681
1gwj FMNMorphinone reductase / 0.680
1icp FMN12-oxophytodienoate reductase 1 1.3.1.42 0.679
2hsa FMN12-oxophytodienoate reductase 3 1.3.1.42 0.679
4utk FNRXenobiotic reductase / 0.679
1h51 FMNPentaerythritol tetranitrate reductase / 0.678
1oyc FMNNADPH dehydrogenase 1 1.6.99.1 0.678
4jic FMNGTN Reductase / 0.674
4h6k FMNNADPH dehydrogenase 1 1.6.99.1 0.671
1z41 FMNNADPH dehydrogenase / 0.670
3c3n FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.670
4wzh FMNDihydroorotate dehydrogenase (fumarate) / 0.670
2abb FMNPentaerythritol tetranitrate reductase / 0.669
3n19 FNRXenobiotic reductase / 0.669
4rnu FMNNADPH dehydrogenase 1 1.6.99.1 0.667
1h50 FMNPentaerythritol tetranitrate reductase / 0.665
2q3o FMN12-oxophytodienoate reductase 3 1.3.1.42 0.664
2bsl FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.663
3p67 FMNPentaerythritol tetranitrate reductase / 0.662
4yco FMNtRNA-dihydrouridine(16) synthase / 0.662
2nli FMNLactate oxidase / 0.660
4yus FMNFamily 3 adenylate cyclase / 0.660
2zfa FMNLactate oxidase / 0.659
2djx FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.657
1icq FMN12-oxophytodienoate reductase 1 1.3.1.42 0.655
4oxx FMNCindoxin / 0.655
1jub FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.654
2hs8 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.654
3aty FMNProstaglandin F2a synthase / 0.654
4rnv FMNNADPH dehydrogenase 1 1.6.99.1 0.652
4utl FNRXenobiotic reductase / 0.652
2djl FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.651
3r7k FDAProbable acyl CoA dehydrogenase / 0.651
4uth FMNXenobiotic reductase / 0.650
4utm FNRXenobiotic reductase / 0.650