Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2vwp NDP Glucose 1-dehydrogenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2vwp NDPGlucose 1-dehydrogenase / 1.006
2vwq NAPGlucose 1-dehydrogenase / 0.949
2b5v NAPGlucose 1-dehydrogenase / 0.947
2vwh NAPGlucose 1-dehydrogenase / 0.928
3mje NDPAmphB / 0.664
4eso NAPPutative oxidoreductase / 0.664
2hk9 ATRShikimate dehydrogenase (NADP(+)) / 0.662
2gmv PEPPhosphoenolpyruvate carboxykinase, cytosolic [GTP] 4.1.1.32 0.660
4nke IPEFarnesyl pyrophosphate synthase 2.5.1.10 0.658
4gvz ADPArginine kinase 2.7.3.3 0.655
1rqj RISFarnesyl diphosphate synthase 2.5.1.10 0.654
4hib 16BUridine 5'-monophosphate synthase 4.1.1.23 0.654
1ae1 NAPTropinone reductase 1 / 0.653
3ewy U5PUridine 5'-monophosphate synthase 4.1.1.23 0.653
2cda NAPGlucose 1-dehydrogenase / 0.652
3qls NDPDihydrofolate reductase 1.5.1.3 0.652
3ntd COAFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 0.651
4b8w GDPGDP-L-fucose synthase 1.1.1.271 0.651
4hxy NDPPlm1 / 0.650