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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2vwm LZI Coagulation factor X 3.4.21.6

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2vwm LZICoagulation factor X 3.4.21.6 0.895
2vvc LZFCoagulation factor X 3.4.21.6 0.809
4lxb 7R9Prothrombin 3.4.21.5 0.698
2xbx RR8Coagulation factor X 3.4.21.6 0.673
4n3l 2FNProthrombin 3.4.21.5 0.673
4bti 7R9Coagulation factor X 3.4.21.6 0.672
1mq6 XLDCoagulation factor X 3.4.21.6 0.669
2y82 930Coagulation factor X 3.4.21.6 0.664
4loy 6XSProthrombin 3.4.21.5 0.656
2p3u 663Coagulation factor X 3.4.21.6 0.654
1lqd CMICoagulation factor X 3.4.21.6 0.651