Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2vvc LZF Coagulation factor X 3.4.21.6

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2vvc LZFCoagulation factor X 3.4.21.6 0.913
2vwm LZICoagulation factor X 3.4.21.6 0.809
2p3u 663Coagulation factor X 3.4.21.6 0.700
1mq6 XLDCoagulation factor X 3.4.21.6 0.691
1ta6 177Prothrombin 3.4.21.5 0.684
3kqb LGJCoagulation factor X 3.4.21.6 0.666
2xbx RR8Coagulation factor X 3.4.21.6 0.665
7kme ACE_0BN_CHG_PRRProthrombin 3.4.21.5 0.653