Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2vtn LZ7 Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2vtn LZ7Cyclin-dependent kinase 2 2.7.11.22 0.825
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
2vto LZ8Cyclin-dependent kinase 2 2.7.11.22 0.733
2vtl LZ5Cyclin-dependent kinase 2 2.7.11.22 0.708
2vtp LZ9Cyclin-dependent kinase 2 2.7.11.22 0.700
4fkt 48KCyclin-dependent kinase 2 2.7.11.22 0.687
3tiz 3TICyclin-dependent kinase 2 2.7.11.22 0.683
1y8y CT7Cyclin-dependent kinase 2 2.7.11.22 0.672
4ez3 0S0Cyclin-dependent kinase 2 2.7.11.22 0.671
2vtq LZACyclin-dependent kinase 2 2.7.11.22 0.669
2c6l DT4Cyclin-dependent kinase 2 2.7.11.22 0.662
1ke7 LS3Cyclin-dependent kinase 2 2.7.11.22 0.657
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.657
2vu3 LZECyclin-dependent kinase 2 2.7.11.22 0.657
3wbl PDYCyclin-dependent kinase 2 2.7.11.22 0.657
3rni 21ZCyclin-dependent kinase 2 2.7.11.22 0.655