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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2vtj LZ4 Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2vtj LZ4Cyclin-dependent kinase 2 2.7.11.22 0.884
4bgh 3I6Cyclin-dependent kinase 2 2.7.11.22 0.722
2w17 I19Cyclin-dependent kinase 2 2.7.11.22 0.716
3rpv 26ZCyclin-dependent kinase 2 2.7.11.22 0.691
2wxv WXVCyclin-dependent kinase 2 2.7.11.22 0.690
4fks 46KCyclin-dependent kinase 2 2.7.11.22 0.690
3qxp X64Cyclin-dependent kinase 2 2.7.11.22 0.682
1ckp PVBCyclin-dependent kinase 2 2.7.11.22 0.681
1oit HDTCyclin-dependent kinase 2 2.7.11.22 0.681
2uzn C96Cyclin-dependent kinase 2 2.7.11.22 0.681
3le6 2BZCyclin-dependent kinase 2 2.7.11.22 0.681
3ti1 B49Cyclin-dependent kinase 2 2.7.11.22 0.679
3rak 03ZCyclin-dependent kinase 2 2.7.11.22 0.677
4fkg 4CKCyclin-dependent kinase 2 2.7.11.22 0.677
2w05 FRTCyclin-dependent kinase 2 2.7.11.22 0.672
3sqq 99ZCyclin-dependent kinase 2 2.7.11.22 0.671
1ke7 LS3Cyclin-dependent kinase 2 2.7.11.22 0.670
4fkr 45KCyclin-dependent kinase 2 2.7.11.22 0.669
4ek6 10KCyclin-dependent kinase 2 2.7.11.22 0.668
4fkp LS5Cyclin-dependent kinase 2 2.7.11.22 0.668
4fkt 48KCyclin-dependent kinase 2 2.7.11.22 0.668
1w0x OLOCyclin-dependent kinase 2 2.7.11.22 0.665
2r3q 5SCCyclin-dependent kinase 2 2.7.11.22 0.665
4fkq 42KCyclin-dependent kinase 2 2.7.11.22 0.665
1vyz N5BCyclin-dependent kinase 2 2.7.11.22 0.661
4fkj 11KCyclin-dependent kinase 2 2.7.11.22 0.659
2vti LZ3Cyclin-dependent kinase 2 2.7.11.22 0.658
4lyn 1YGCyclin-dependent kinase 2 2.7.11.22 0.658
4fki 09KCyclin-dependent kinase 2 2.7.11.22 0.656
3qrt X14Cyclin-dependent kinase 2 2.7.11.22 0.654
2b55 D31Cyclin-dependent kinase 2 2.7.11.22 0.653
3igg EFQCyclin-dependent kinase 2 2.7.11.22 0.652
4fkv 61KCyclin-dependent kinase 2 2.7.11.22 0.651
2bts U32Cyclin-dependent kinase 2 2.7.11.22 0.650
3gb2 G3BGlycogen synthase kinase-3 beta 2.7.11.26 0.650
3i5z Z48Mitogen-activated protein kinase 1 2.7.11.24 0.650