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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2vrb NAP Triphenylmethane reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2vrb NAPTriphenylmethane reductase / 1.255
2jl1 NAPTriphenylmethane reductase / 1.046
4hnh NAPNAD-dependent epimerase/dehydratase / 0.723
1n7h NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.717
1n7g NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.710
4z3d NDPCarbonyl reductase [NADPH] 1 1.1.1.184 0.700
2dt5 NADRedox-sensing transcriptional repressor Rex / 0.682
1ybm NAPUncharacterized protein At5g02240 / 0.677
1xq6 NAPUncharacterized protein At5g02240 / 0.672
3e8x NAPBH1520 protein / 0.671
2yut NAPPutative short-chain oxidoreductase / 0.668
2gn8 NAPUDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.667
4id9 NADPutative UDP-glucose 4-epimerase / 0.653