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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2vr1 ATF Biotin carboxylase 6.3.4.14

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2vr1 ATFBiotin carboxylase 6.3.4.14 0.988
3g8d ADPBiotin carboxylase 6.3.4.14 0.729
2j9g ANPBiotin carboxylase 6.3.4.14 0.713
4mv8 ACPBiotin carboxylase 6.3.4.14 0.702
4zme ADNMyosin heavy chain kinase A 2.7.11.7 0.684
4mv1 ADPBiotin carboxylase 6.3.4.14 0.679
3vpc ADPGlutamate--LysW ligase ArgX 6.3.2 0.668
3i12 ADPD-alanine--D-alanine ligase A 6.3.2.4 0.665
2zdg ADPD-alanine--D-alanine ligase / 0.659
3fhi ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.658
2cx8 SAHRibosomal RNA small subunit methyltransferase E / 0.652
1mqb ANPEphrin type-A receptor 2 2.7.10.1 0.651
4ffr ATPUncharacterized protein / 0.650