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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2vo3 M04 cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2vo3 M04cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 1.088
2vo6 M05cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.927
2vo0 M03cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.781
3cqw CQWRAC-alpha serine/threonine-protein kinase 2.7.11.1 0.750
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
2uw0 GVKcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.729
2vnw M01cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.720
3mvh WFERAC-alpha serine/threonine-protein kinase 2.7.11.1 0.708
2vo7 M05cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.702
3mvj XFEcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.696
1sve I01cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.694
2uvz GVJcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.690
3mv5 XFERAC-alpha serine/threonine-protein kinase 2.7.11.1 0.680
3zo4 QWIcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.677
4oti MI1Serine/threonine-protein kinase N1 / 0.667
2x6d X6DAurora kinase A 2.7.11.1 0.661
4e5f 0N7Polymerase acidic protein / 0.660
4gv1 0XZRAC-alpha serine/threonine-protein kinase 2.7.11.1 0.656
1rej B1LcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.655
4xw5 ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.651