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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2vnh FAD NADPH:ferredoxin reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2vnh FADNADPH:ferredoxin reductase / 1.476
2vnk FADNADPH:ferredoxin reductase / 1.316
2bgj FADNADPH:ferredoxin reductase / 1.227
4b4d FADFerredoxin-NADP reductase / 1.170
2qdx FADFerredoxin--NADP+ reductase / 1.132
3crz FADFerredoxin--NADP+ reductase / 1.121
2bgi FADNADPH:ferredoxin reductase / 1.120
2vnj FADNADPH:ferredoxin reductase / 1.099
4fk8 FADFerredoxin--NADP reductase / 0.984
4k1x FADNADPH:ferredoxin reductase / 0.967
1a8p FADFerredoxin--NADP reductase / 0.855
1cqx FADFlavohemoprotein / 0.841
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.833
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.818
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.816
1amo FADNADPH--cytochrome P450 reductase / 0.806
3qfs FADNADPH--cytochrome P450 reductase / 0.806
3ojw FADNADPH--cytochrome P450 reductase / 0.803
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.798
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.792
2bn4 FADNADPH--cytochrome P450 reductase / 0.784
1j9z FADNADPH--cytochrome P450 reductase / 0.781
3qft FADNADPH--cytochrome P450 reductase / 0.781
2eix FADNADH-cytochrome b5 reductase / 0.767
4y7c FADNADPH--cytochrome P450 reductase / 0.766
3qe2 FADNADPH--cytochrome P450 reductase / 0.764
4yaf FADNADPH--cytochrome P450 reductase / 0.760
4yau FADNADPH--cytochrome P450 reductase / 0.756
4y9u FADNADPH--cytochrome P450 reductase / 0.753
2pia FMNPhthalate dioxygenase reductase / 0.749
2cnd FADNitrate reductase [NADH] 1.7.1.1 0.740
4y9r FADNADPH--cytochrome P450 reductase / 0.736
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.735
3qfc FADNADPH--cytochrome P450 reductase / 0.733
1bjk FADFerredoxin--NADP reductase 1.18.1.2 0.730
2ptf FMNUncharacterized protein MTH_863 / 0.727
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.726
1w34 FADFerredoxin--NADP reductase 1.18.1.2 0.722
1ja1 FADNADPH--cytochrome P450 reductase / 0.721
1qgz FADFerredoxin--NADP reductase 1.18.1.2 0.720
2bf4 FADNADPH--cytochrome P450 reductase / 0.720
2gpj FADSiderophore-interacting protein / 0.712
2iml FMNUncharacterized protein / 0.708
2vyq FADFerredoxin--NADP reductase 1.18.1.2 0.708
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.708
1efp FADElectron transfer flavoprotein subunit alpha / 0.704
1h42 FADFerredoxin--NADP reductase 1.18.1.2 0.701
3in6 FMNUncharacterized protein / 0.701
1gaw FADFerredoxin / 0.700
1rz1 FADPhenol 2-hydroxylase component B / 0.700
2dji FADPyruvate oxidase / 0.700
3ojx FADNADPH--cytochrome P450 reductase / 0.700
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.699
3a20 FMNFMN-binding protein / 0.699
1ogj FADFerredoxin--NADP reductase 1.18.1.2 0.698
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.697
3a6r FMNFMN-binding protein / 0.696
3a6q FMNFMN-binding protein / 0.695
3vy2 FMNFMN-binding protein / 0.695
1wli FMNFMN-binding protein / 0.694
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.694
2b5o FADFerredoxin--NADP reductase 1.18.1.2 0.692
3bnk FMNFlavoredoxin / 0.692
2nr4 FMNConserved protein / 0.691
4yao FADNADPH--cytochrome P450 reductase / 0.691
1ogi FADFerredoxin--NADP reductase 1.18.1.2 0.687
1go2 FADFerredoxin--NADP reductase 1.18.1.2 0.684
4f07 FADStyrene monooxygenase component 2 / 0.682
1efv FADElectron transfer flavoprotein subunit alpha, mitochondrial / 0.680
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.678
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 0.678
1e63 FADFerredoxin--NADP reductase 1.18.1.2 0.677
1sm4 FADFerredoxin--NADP reductase / 0.677
2pr5 FMNBlue-light photoreceptor / 0.677
3fpk FADFerredoxin-NADP reductase / 0.677
3w5u FADFerredoxin / 0.677
1b2r FADFerredoxin--NADP reductase 1.18.1.2 0.675
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.675
4eep FMNPhototropin-2 2.7.11.1 0.675
4eet FMNPhototropin-2 2.7.11.1 0.675
1flm FMNFMN-binding protein / 0.674
1tll FADNitric oxide synthase, brain 1.14.13.39 0.674
3qfr FADNADPH--cytochrome P450 reductase / 0.674
1h85 FADFerredoxin--NADP reductase 1.18.1.2 0.673
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 0.670
2bpo FADNADPH--cytochrome P450 reductase / 0.670
3e4v FMNUncharacterized protein / 0.670
1eje FMNProtein MTH_152 / 0.669
4c43 FADFerredoxin--NADP reductase 1.18.1.2 0.669
2rc6 FADFerredoxin--NADP reductase / 0.668
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.667
1usc FMNMonooxygenase / 0.667
3amf FMNFMN-binding protein / 0.667
3vo2 FADFerredoxin--NADP reductase / 0.667
3vy5 FMNFMN-binding protein / 0.667
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.663
3awh FMNFMN-binding protein / 0.663
4ees FMNPhototropin-2 2.7.11.1 0.663
1v5e FADPyruvate oxidase / 0.662
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.662
1e64 FADFerredoxin--NADP reductase 1.18.1.2 0.660
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.659
2e83 FMNFMN-binding protein / 0.659
1zmd FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.657
3cls FADElectron transfer flavoprotein subunit alpha / 0.657
3dnt ATPSerine/threonine-protein kinase toxin HipA / 0.657
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.656
1cne FADNitrate reductase [NADH] 1.7.1.1 0.656
1gaq FADFerredoxin / 0.656
4hmw FMNPyridoxamine 5'-phosphate oxidase / 0.655
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 0.654
4mo2 FADUDP-galactopyranose mutase / 0.654
2v0u FMNNPH1-1 / 0.653
1cnf FADNitrate reductase [NADH] 1.7.1.1 0.652
3nix FADFlavoprotein/dehydrogenase / 0.652
1gjr FADFerredoxin--NADP reductase 1.18.1.2 0.651
2a1u FADElectron transfer flavoprotein subunit alpha, mitochondrial / 0.651
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.651
3uoz FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.650