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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2vn9 GVD Calcium/calmodulin-dependent protein kinase type II subunit delta 2.7.11.17

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2vn9 GVDCalcium/calmodulin-dependent protein kinase type II subunit delta 2.7.11.17 1.037
4bgq 38RCyclin-dependent kinase-like 5 2.7.11.22 0.727
3bhh 5CPCalcium/calmodulin-dependent protein kinase type II subunit beta 2.7.11.17 0.708
3le6 2BZCyclin-dependent kinase 2 2.7.11.22 0.695
2hog 710Serine/threonine-protein kinase Chk1 2.7.11.1 0.689
4fv8 E63Mitogen-activated protein kinase 1 2.7.11.24 0.686
4fkg 4CKCyclin-dependent kinase 2 2.7.11.22 0.685
4fkj 11KCyclin-dependent kinase 2 2.7.11.22 0.681
1vyz N5BCyclin-dependent kinase 2 2.7.11.22 0.677
4fki 09KCyclin-dependent kinase 2 2.7.11.22 0.677
1vyw 292Cyclin-dependent kinase 2 2.7.11.22 0.676
3ezr EZRCyclin-dependent kinase 2 2.7.11.22 0.676
3zdu 38RCyclin-dependent kinase-like 3 2.7.11.22 0.676
3ggf GVDSerine/threonine-protein kinase 26 / 0.675
4f63 0S7Fibroblast growth factor receptor 1 / 0.674
2xba 571ALK tyrosine kinase receptor 2.7.10.1 0.669
4bkz 1WSMaternal embryonic leucine zipper kinase 2.7.11.1 0.667
4ek6 10KCyclin-dependent kinase 2 2.7.11.22 0.667
2c3k ABOSerine/threonine-protein kinase Chk1 2.7.11.1 0.666
4bdf H3RSerine/threonine-protein kinase Chk2 2.7.11.1 0.663
3ig7 EFPCyclin-dependent kinase 2 2.7.11.22 0.661
3lfq A28Cyclin-dependent kinase 2 2.7.11.22 0.661
3i81 EBIInsulin-like growth factor 1 receptor 2.7.10.1 0.660
4b8m VX6Aurora kinase B-A 2.7.11.1 0.659
3uli 1N3Cyclin-dependent kinase 2 2.7.11.22 0.657
2bkz SBCCyclin-dependent kinase 2 2.7.11.22 0.656
2owb 626Serine/threonine-protein kinase PLK1 2.7.11.21 0.652
3igg EFQCyclin-dependent kinase 2 2.7.11.22 0.651
3w16 P9JAurora kinase A 2.7.11.1 0.650