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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2vfz UPF N-acetyllactosaminide alpha-1,3-galactosyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2vfz UPFN-acetyllactosaminide alpha-1,3-galactosyltransferase / 1.364
2vs5 GDUN-acetyllactosaminide alpha-1,3-galactosyltransferase / 1.109
5c1g GDUHisto-blood group ABO system transferase / 0.990
5c4f UPGHisto-blood group ABO system transferase / 0.931
3zgf IUGHisto-blood group ABO system transferase / 0.926
5c4c UPGHisto-blood group ABO system transferase / 0.908
5c3a URMHisto-blood group ABO system transferase / 0.901
5c48 URMHisto-blood group ABO system transferase / 0.897
3v0o 4GWHisto-blood group ABO system transferase / 0.878
5c47 URMHisto-blood group ABO system transferase / 0.878
3v0p 4GWHisto-blood group ABO system transferase / 0.862
5c1l GDUHisto-blood group ABO system transferase / 0.857
3v0n 4GWHisto-blood group ABO system transferase / 0.856
5c4b UPGHisto-blood group ABO system transferase / 0.854
5c3b URMHisto-blood group ABO system transferase / 0.827
1g8o U5PN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.814
5c8r UPGHisto-blood group ABO system transferase / 0.810
4kc4 WS3Histo-blood group ABO system transferase / 0.805
5c1h GDUHisto-blood group ABO system transferase / 0.776
3rmw UPGGlycogenin-1 2.4.1.186 0.773
1zdg UPGGlycogenin-1 2.4.1.186 0.763
3v0m 5GWHisto-blood group ABO system transferase / 0.754
1zdf UPGGlycogenin-1 2.4.1.186 0.736
1oqm UD2Beta-1,4-galactosyltransferase 1 / 0.718
3t7o UPGGlycogenin-1 2.4.1.186 0.715
1g9r UPFLgtC / 0.692
1g93 UPGN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.687
1ss9 UPFLgtC / 0.679
4yb7 ATPATP phosphoribosyltransferase / 0.676
3tw6 ADPPyruvate carboxylase / 0.675
3tij URINucleoside permease / 0.666
1thn ADPAnti-sigma F factor / 0.662
1ga8 UPFLgtC / 0.661
1kws UGAGalactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 / 0.660
2dr8 CTPCCA-adding enzyme 2.7.7.72 0.657
4ee3 UDHBeta-1,4-galactosyltransferase 1 / 0.655
1o23 UPGBeta-1,4-galactosyltransferase 1 / 0.651
4pd6 URINucleoside permease / 0.651