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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2vdy HCY Corticosteroid-binding globulin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2vdy HCYCorticosteroid-binding globulin / 0.968
2v95 HCYCorticosteroid-binding globulin / 0.755
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4l1x STRAldo-keto reductase family 1 member C2 / 0.668
4e5f 0N7Polymerase acidic protein / 0.660
5dx3 ESTEstrogen receptor / 0.657
2jn3 JN3Fatty acid-binding protein, liver / 0.653
3uzx AOM3-oxo-5-beta-steroid 4-dehydrogenase / 0.651
1zhw HC2Oxysterol-binding protein homolog 4 / 0.650
3s79 ASDAromatase 1.14.14.14 0.650