Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2vd5 BI8 Myotonin-protein kinase 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2vd5 BI8Myotonin-protein kinase 2.7.11.1 1.018
1uvr BI83-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.739
2ow3 BIMGlycogen synthase kinase-3 beta 2.7.11.26 0.737
1zrz BI1Protein kinase C iota type 2.7.11.13 0.734
2jed LG8Protein kinase C theta type 2.7.11.13 0.734
1uu8 BI13-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.717
3iw4 LW4Protein kinase C alpha type 2.7.11.13 0.701
1uu3 LY43-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.700
1uu7 BI23-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.696
1uu9 BI33-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.693
4oth DRNSerine/threonine-protein kinase N1 / 0.693
3biz 61EWee1-like protein kinase 2.7.10.2 0.689
2bil BI1Serine/threonine-protein kinase pim-1 2.7.11.1 0.675
3orz BI43-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.664
2ym4 4YMSerine/threonine-protein kinase Chk1 2.7.11.1 0.657
4mvf STUCalcium-dependent protein kinase 2 2.7.11.1 0.654
2in6 839Wee1-like protein kinase 2.7.10.2 0.652