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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2vci 2GJ Heat shock protein HSP 90-alpha

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2vci 2GJHeat shock protein HSP 90-alpha / 1.131
3hhu 819Heat shock protein HSP 90-alpha / 0.810
2vcj 2EQHeat shock protein HSP 90-alpha / 0.802
2xht C0YHeat shock protein HSP 90-alpha / 0.799
2yk2 YJWHeat shock protein HSP 90-alpha / 0.786
2cct 2E1Heat shock protein HSP 90-alpha / 0.783
2bsm BSMHeat shock protein HSP 90-alpha / 0.776
2uwd 2GGHeat shock protein HSP 90-alpha / 0.765
3k97 4CDHeat shock protein HSP 90-alpha / 0.765
1yc1 4BCHeat shock protein HSP 90-alpha / 0.744
2yjw YJWHeat shock protein HSP 90-alpha / 0.739
3ekr PY9Heat shock protein HSP 90-alpha / 0.734
4b7p 9UNHeat shock protein HSP 90-alpha / 0.713
3eko PYUHeat shock protein HSP 90-alpha / 0.708
3hek BD0Heat shock protein HSP 90-alpha / 0.703
2yi6 6QMHeat shock protein HSP 90-alpha / 0.688
2xab VHDHeat shock protein HSP 90-alpha / 0.681
3k99 PFTHeat shock protein HSP 90-alpha / 0.673
2bre KJ2ATP-dependent molecular chaperone HSP82 / 0.664
2xjj L81Heat shock protein HSP 90-alpha / 0.661
2yi7 BZ8Heat shock protein HSP 90-alpha / 0.660
2bt0 CT5Heat shock protein HSP 90-alpha / 0.659
2xx2 13CATP-dependent molecular chaperone HSP82 / 0.658
2xjx XJXHeat shock protein HSP 90-alpha / 0.655
1yc3 4BCHeat shock protein HSP 90-alpha / 0.654