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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2vbp VB1 Isopenicillin N synthase 1.21.3.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2vbp VB1Isopenicillin N synthase 1.21.3.1 0.987
2bu9 HFVIsopenicillin N synthase 1.21.3.1 0.918
2vbd V10Isopenicillin N synthase 1.21.3.1 0.906
1hb1 OCVIsopenicillin N synthase 1.21.3.1 0.845
1w06 W05Isopenicillin N synthase 1.21.3.1 0.844
1uzw CDHIsopenicillin N synthase 1.21.3.1 0.835
2ivi ACWIsopenicillin N synthase 1.21.3.1 0.829
2wo7 ASVIsopenicillin N synthase 1.21.3.1 0.828
1bk0 ACVIsopenicillin N synthase 1.21.3.1 0.827
1obn ASVIsopenicillin N synthase 1.21.3.1 0.824
3zoi M2WIsopenicillin N synthase 1.21.3.1 0.822
2jb4 A14Isopenicillin N synthase 1.21.3.1 0.817
1blz ACVIsopenicillin N synthase 1.21.3.1 0.816
1qiq ACCIsopenicillin N synthase 1.21.3.1 0.800
1hb3 SCVIsopenicillin N synthase 1.21.3.1 0.799
1qjf ACSIsopenicillin N synthase 1.21.3.1 0.793
2y60 M8FIsopenicillin N synthase 1.21.3.1 0.785
2bjs ACVIsopenicillin N synthase 1.21.3.1 0.770
4bb3 KKAIsopenicillin N synthase 1.21.3.1 0.759
1odn APVIsopenicillin N synthase 1.21.3.1 0.753
2y6f M9FIsopenicillin N synthase 1.21.3.1 0.737
1oc1 ASVIsopenicillin N synthase 1.21.3.1 0.698
4bqs K2QShikimate kinase 2.7.1.71 0.667
3uwq U5POrotidine 5'-phosphate decarboxylase / 0.665
3drc MTXDihydrofolate reductase 1.5.1.3 0.664
2zza FOLDihydrofolate reductase / 0.663
1arg PPDAspartate aminotransferase 2.6.1.1 0.662
2vcm M11Isopenicillin N synthase 1.21.3.1 0.661
3lzx NAPFerredoxin--NADP reductase 2 1.18.1.2 0.659
1gir NDPIota toxin component Ia / 0.655
3och 2MXDihydrofolate reductase 1.5.1.3 0.655
1df7 MTXDihydrofolate reductase 1.5.1.3 0.654
3zky WT4Isopenicillin N synthase 1.21.3.1 0.654
1rg7 MTXDihydrofolate reductase 1.5.1.3 0.653
3ipk PMSSurface protein adhesin / 0.651
4isu IKMGlutamate receptor 2 / 0.651
1jol FFODihydrofolate reductase 1.5.1.3 0.650