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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2vbd V10 Isopenicillin N synthase 1.21.3.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2vbd V10Isopenicillin N synthase 1.21.3.1 1.100
2bu9 HFVIsopenicillin N synthase 1.21.3.1 0.940
2vbp VB1Isopenicillin N synthase 1.21.3.1 0.906
2ivi ACWIsopenicillin N synthase 1.21.3.1 0.853
3zoi M2WIsopenicillin N synthase 1.21.3.1 0.850
1hb1 OCVIsopenicillin N synthase 1.21.3.1 0.844
1obn ASVIsopenicillin N synthase 1.21.3.1 0.840
2y6f M9FIsopenicillin N synthase 1.21.3.1 0.838
1bk0 ACVIsopenicillin N synthase 1.21.3.1 0.835
2wo7 ASVIsopenicillin N synthase 1.21.3.1 0.833
1blz ACVIsopenicillin N synthase 1.21.3.1 0.826
2jb4 A14Isopenicillin N synthase 1.21.3.1 0.824
1qjf ACSIsopenicillin N synthase 1.21.3.1 0.821
1uzw CDHIsopenicillin N synthase 1.21.3.1 0.817
1qiq ACCIsopenicillin N synthase 1.21.3.1 0.801
1w06 W05Isopenicillin N synthase 1.21.3.1 0.801
2vcm M11Isopenicillin N synthase 1.21.3.1 0.768
2y60 M8FIsopenicillin N synthase 1.21.3.1 0.763
1odn APVIsopenicillin N synthase 1.21.3.1 0.748
1oc1 ASVIsopenicillin N synthase 1.21.3.1 0.707
4bb3 KKAIsopenicillin N synthase 1.21.3.1 0.702
2bjs ACVIsopenicillin N synthase 1.21.3.1 0.666
3ntd COAFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 0.666
3zku HCVIsopenicillin N synthase 1.21.3.1 0.661
3lzx NAPFerredoxin--NADP reductase 2 1.18.1.2 0.655
1ikg REXD-alanyl-D-alanine carboxypeptidase 3.4.16.4 0.652