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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2vb8 TLM 3-oxoacyl-[acyl-carrier-protein] synthase 1 2.3.1.41

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2vb8 TLM3-oxoacyl-[acyl-carrier-protein] synthase 1 2.3.1.41 0.790
2wgg TLM3-oxoacyl-[acyl-carrier-protein] synthase 1 2.3.1.41 0.762
4c6z TLE3-oxoacyl-ACP synthase / 0.714
2aq7 TL53-oxoacyl-[acyl-carrier-protein] synthase 1 2.3.1.41 0.713
4c72 TLG3-oxoacyl-ACP synthase / 0.699
4c71 7RD3-oxoacyl-ACP synthase / 0.684
4c73 TLH3-oxoacyl-ACP synthase / 0.671
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.665
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.663
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.663
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.662
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.661
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.660
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2puc GUNHTH-type transcriptional repressor PurR / 0.660
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.660
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.659
4e5f 0N7Polymerase acidic protein / 0.659
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.658
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.658
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.657