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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2v92 ATP 5'-AMP-activated protein kinase subunit gamma-1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2v92 ATP5'-AMP-activated protein kinase subunit gamma-1 / 1.268
4eaj ATP5'-AMP-activated protein kinase subunit gamma-1 / 0.771
4dqw ATPInosine-5'-monophosphate dehydrogenase / 0.714
3fwr ADPTranscriptional repressor CcpN / 0.713
4eak ATP5'-AMP-activated protein kinase subunit gamma-1 / 0.687
2oo7 AP5Adenylate kinase / 0.686
4eag ATP5'-AMP-activated protein kinase subunit gamma-1 / 0.678
4o25 GTPGTP-binding protein Rheb / 0.678
2y8q ADP5'-AMP-activated protein kinase subunit gamma-1 / 0.674
3x1z GNPRas-related protein Rap-1b / 0.671
5jr3 SAHCarminomycin 4-O-methyltransferase DnrK 2.1.1.292 0.668
1u3v NADAlcohol dehydrogenase 1B 1.1.1.1 0.658
4nec SAHPutative SAM-dependent methyltransferase / 0.658
5kjc NAJAlcohol dehydrogenase E chain 1.1.1.1 0.657
4xd2 NAIAlcohol dehydrogenase E chain 1.1.1.1 0.656
3zu0 A12NAD 5'-nucleotidase 3.1.3.5 0.654
1suw NAPNAD kinase / 0.653
4fk1 FADPutative thioredoxin reductase / 0.653
3hpq AP5Adenylate kinase / 0.652