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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2v7u SAM 5'-fluoro-5'-deoxy-adenosine synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2v7u SAM5'-fluoro-5'-deoxy-adenosine synthase / 1.431
2v7t SAH5'-fluoro-5'-deoxy-adenosine synthase / 1.125
3lfz ADPUncharacterized protein MJ1225 / 0.700
2zbv ADNUncharacterized protein / 0.678
2pkm ADNAdenosine kinase 2.7.1.20 0.670
4ube 2FAAdenosine kinase 2.7.1.20 0.657
2ad5 ADPCTP synthase / 0.654
4ktt SAMS-adenosylmethionine synthase isoform type-2 2.5.1.6 0.654