Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2v34 CTN 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2v34 CTN4-diphosphocytidyl-2-C-methyl-D-erythritol kinase / 0.845
2v8p CDP4-diphosphocytidyl-2-C-methyl-D-erythritol kinase / 0.797
2v2v V124-diphosphocytidyl-2-C-methyl-D-erythritol kinase / 0.782
4emd C5P4-diphosphocytidyl-2-C-methyl-D-erythritol kinase / 0.723
1oj4 CDM4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 2.7.1.148 0.715
2v2q NVG4-diphosphocytidyl-2-C-methyl-D-erythritol kinase / 0.699