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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2v2v V12 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2v2v V124-diphosphocytidyl-2-C-methyl-D-erythritol kinase / 0.880
2v8p CDP4-diphosphocytidyl-2-C-methyl-D-erythritol kinase / 0.804
2v2q NVG4-diphosphocytidyl-2-C-methyl-D-erythritol kinase / 0.788
2v34 CTN4-diphosphocytidyl-2-C-methyl-D-erythritol kinase / 0.782
1oj4 CDM4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 2.7.1.148 0.721
1rac CTPAspartate carbamoyltransferase regulatory chain / 0.652