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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2uz2 BTN Avd protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2uz2 BTNAvd protein / 1.111
2uyw BTNAvd protein / 0.925
2jgs BTNAvidin / 0.845
4bcs BTNAvidin-related protein 4/5 / 0.843
1y52 BTNAvidin-related protein 4/5 / 0.815
2fhl BNIAvidin-related protein 4/5 / 0.812
2fhn BNIAvidin-related protein 4/5 / 0.811
3vgw NVZAvidin / 0.811
2c4i BTNAvidin / 0.795
4dne DTBStreptavidin / 0.772
3wyp BSOStreptavidin / 0.766
2rtd BTNStreptavidin / 0.757
2rte BTNStreptavidin / 0.757
2rtg BTNStreptavidin / 0.754
2izg BTNStreptavidin / 0.751
2izj BTNStreptavidin / 0.751
3rdo BTNStreptavidin / 0.749
1swn BTNStreptavidin / 0.747
2rtf BTNStreptavidin / 0.747
2rtr IMIStreptavidin / 0.739
3ry2 BTNStreptavidin / 0.734
1n9m BTNStreptavidin / 0.730
4bj8 BTNAvidin / 0.730
1ij8 BNIAvidin / 0.729
3vhh VHHAvidin / 0.729
1lcw SHMStreptavidin / 0.728
1swe BTNStreptavidin / 0.723
1nqm BTNStreptavidin / 0.717
1mep BTNStreptavidin / 0.715
1avd BTNAvidin / 0.713
2avi BTNAvidin / 0.713
3rdq DTBStreptavidin / 0.710
2rtq IMIStreptavidin / 0.706
1luq BTNStreptavidin / 0.697
4yvb BTNStreptavidin / 0.691
2zsc BTNTamavidin2 / 0.687
1n43 BTNStreptavidin / 0.679
1rxh BNIStreptavidin / 0.678
2rto IMIStreptavidin / 0.674
2rtl IMIStreptavidin / 0.670
2rtp IMIStreptavidin / 0.669
4ggz BTNBll1558 protein / 0.669
2rtn IMIStreptavidin / 0.667
3vhm NPKAvidin / 0.666
1i9h BNIStreptavidin / 0.663
1stp BTNStreptavidin / 0.661
1ndj BTNStreptavidin / 0.660
3t2w BTNAvidin/streptavidin / 0.651
2izl IMIStreptavidin / 0.650