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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2uyw BTN Avd protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2uyw BTNAvd protein / 1.081
1y52 BTNAvidin-related protein 4/5 / 0.998
4bcs BTNAvidin-related protein 4/5 / 0.944
2fhn BNIAvidin-related protein 4/5 / 0.938
2fhl BNIAvidin-related protein 4/5 / 0.925
2uz2 BTNAvd protein / 0.925
2y3f BTNStreptavidin / 0.915
2izf BTNStreptavidin / 0.907
4gda BTNStreptavidin / 0.904
3vgw NVZAvidin / 0.903
4dne DTBStreptavidin / 0.902
2izh BTNStreptavidin / 0.901
3wyq BTNStreptavidin / 0.901
3ry2 BTNStreptavidin / 0.900
2rte BTNStreptavidin / 0.888
2jgs BTNAvidin / 0.885
2rtf BTNStreptavidin / 0.882
1mk5 BTNStreptavidin / 0.881
2izi BTNStreptavidin / 0.881
2rtd BTNStreptavidin / 0.880
1i9h BNIStreptavidin / 0.877
2izj BTNStreptavidin / 0.873
2zsc BTNTamavidin2 / 0.873
3ew2 BTNHypothetical conserved protein / 0.872
1lcw SHMStreptavidin / 0.865
3wyp BSOStreptavidin / 0.865
2rtg BTNStreptavidin / 0.862
2izg BTNStreptavidin / 0.861
1n9m BTNStreptavidin / 0.858
1nqm BTNStreptavidin / 0.857
1luq BTNStreptavidin / 0.850
1n43 BTNStreptavidin / 0.850
1stp BTNStreptavidin / 0.847
4yvb BTNStreptavidin / 0.847
3rdo BTNStreptavidin / 0.837
1df8 BTNStreptavidin / 0.827
4z28 BTNHoefavidin / 0.826
3rdq DTBStreptavidin / 0.823
3vhi VHIAvidin / 0.823
1swg BTNStreptavidin / 0.816
4bj8 BTNAvidin / 0.816
1swn BTNStreptavidin / 0.813
3t2w BTNAvidin/streptavidin / 0.812
1swr BTNStreptavidin / 0.811
1rxj BNIStreptavidin / 0.794
2avi BTNAvidin / 0.792
1ndj BTNStreptavidin / 0.786
2c4i BTNAvidin / 0.784
2rtp IMIStreptavidin / 0.781
1rxh BNIStreptavidin / 0.779
1lcz BH7Streptavidin / 0.778
1swt BTNStreptavidin / 0.778
1swp BTQStreptavidin / 0.772
2izl IMIStreptavidin / 0.771
2rto IMIStreptavidin / 0.771
1mep BTNStreptavidin / 0.762
1swp BTNStreptavidin / 0.762
2rtr IMIStreptavidin / 0.751
2rtm IMIStreptavidin / 0.749
4ggz BTNBll1558 protein / 0.749
2rtq IMIStreptavidin / 0.737
1ij8 BNIAvidin / 0.727
1swd BTNStreptavidin / 0.723
2rtn IMIStreptavidin / 0.723
1avd BTNAvidin / 0.693
2rtl IMIStreptavidin / 0.680
3wzn BTNStreptavidin / 0.680
2rtk GLLStreptavidin / 0.666
2nmt NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.663
1ldq SHMAvidin / 0.661
4c68 NHWGlycylpeptide N-tetradecanoyltransferase / 0.657
3vhm NPKAvidin / 0.650