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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2uvy GVI cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2uvy GVIcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.892
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
3zo1 SIJcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.694
4dh5 ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.692
2uw7 GVPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.685
3mvj XFEcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.685
2phk ATPPhosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform 2.7.11.19 0.679
3mv5 XFERAC-alpha serine/threonine-protein kinase 2.7.11.1 0.671
3zo4 QWIcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.671
2wmu ZYUSerine/threonine-protein kinase Chk1 2.7.11.1 0.669
1u5r ATPSerine/threonine-protein kinase TAO2 2.7.11.1 0.663
3blq ATPCyclin-dependent kinase 9 2.7.11.22 0.663
4dg3 ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.663
4iaf ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.661
4wh2 ADPN-acetylhexosamine 1-kinase 2.7.1.162 0.661
3dqw AGSProto-oncogene tyrosine-protein kinase Src 2.7.10.2 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4iac ACPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.660
3idb ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.655
4dh7 ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.655
5e92 ANPTGF-beta receptor type-2 2.7.11.30 0.653
2ijm ADPFocal adhesion kinase 1 2.7.10.2 0.651
2acx ANPG protein-coupled receptor kinase 6 2.7.11.16 0.650