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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2tps TPS Thiamine-phosphate synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2tps TPSThiamine-phosphate synthase / 1.144
1g4t FTPThiamine-phosphate synthase / 1.121
1g4s TPSThiamine-phosphate synthase / 1.118
1g6c TZPThiamine-phosphate synthase / 0.902
1g67 TZPThiamine-phosphate synthase / 0.901
1g69 TZPThiamine-phosphate synthase / 0.900
3nl6 TPSUncharacterized protein / 0.811
3qh2 3NMThiazole tautomerase / 0.781
1g6c IFPThiamine-phosphate synthase / 0.731
3o15 IFPThiamine-phosphate synthase / 0.730
3o15 3NMThiamine-phosphate synthase / 0.709