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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2tmn 0FA Thermolysin 3.4.24.27

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2tmn 0FAThermolysin 3.4.24.27 0.917
4tmn 0PKThermolysin 3.4.24.27 0.878
4h57 0PJThermolysin 3.4.24.27 0.855
3t8c UBWThermolysin 3.4.24.27 0.839
4d9w X32Thermolysin 3.4.24.27 0.837
3t87 UBZThermolysin 3.4.24.27 0.822
3t74 UBYThermolysin 3.4.24.27 0.808
3t8d UBVThermolysin 3.4.24.27 0.808
4b52 RDFBacillolysin / 0.803
3fv4 1U4Thermolysin 3.4.24.27 0.750
3f28 S7BThermolysin 3.4.24.27 0.707
1u4g HPIElastase 3.4.24.26 0.692
3dwb RDFEndothelin-converting enzyme 1 3.4.24.71 0.679
3fgd BYAThermolysin 3.4.24.27 0.653
3fvp UB2Thermolysin 3.4.24.27 0.652