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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2rtr IMI Streptavidin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2rtr IMIStreptavidin / 1.033
2rtq IMIStreptavidin / 0.985
2izl IMIStreptavidin / 0.958
2rtp IMIStreptavidin / 0.930
2rtn IMIStreptavidin / 0.915
2rtg BTNStreptavidin / 0.902
2rte BTNStreptavidin / 0.892
3wyq BTNStreptavidin / 0.891
2rtf BTNStreptavidin / 0.887
1nc9 IMIStreptavidin / 0.886
2rtd BTNStreptavidin / 0.886
2rto IMIStreptavidin / 0.885
3ry2 BTNStreptavidin / 0.881
1n9m BTNStreptavidin / 0.879
1mk5 BTNStreptavidin / 0.876
1nqm BTNStreptavidin / 0.873
1n43 BTNStreptavidin / 0.872
2izi BTNStreptavidin / 0.871
2izj BTNStreptavidin / 0.870
4yvb BTNStreptavidin / 0.859
2izg BTNStreptavidin / 0.857
1i9h BNIStreptavidin / 0.856
1swt BTNStreptavidin / 0.844
4gda BTNStreptavidin / 0.844
3wyp BSOStreptavidin / 0.841
1luq BTNStreptavidin / 0.837
4bx7 B4FStreptavidin / 0.831
2rtm IMIStreptavidin / 0.826
1ndj BTNStreptavidin / 0.819
1swg BTNStreptavidin / 0.819
3rdo BTNStreptavidin / 0.817
1stp BTNStreptavidin / 0.815
4dne DTBStreptavidin / 0.813
2zsc BTNTamavidin2 / 0.808
1swe BTNStreptavidin / 0.801
1mep BTNStreptavidin / 0.795
3rdq DTBStreptavidin / 0.789
1rxj BNIStreptavidin / 0.765
1swr BTNStreptavidin / 0.761
1swp BTNStreptavidin / 0.752
2uyw BTNAvd protein / 0.751
1rxh BNIStreptavidin / 0.740
2uz2 BTNAvd protein / 0.739
1swd BTNStreptavidin / 0.738
1swp BTQStreptavidin / 0.730
1swn BTNStreptavidin / 0.724
3ew2 BTNHypothetical conserved protein / 0.716
2c4i BTNAvidin / 0.703
3vgw NVZAvidin / 0.700
4bcs BTNAvidin-related protein 4/5 / 0.699
2avi BTNAvidin / 0.687
3wzn BTNStreptavidin / 0.671
4ggz BTNBll1558 protein / 0.669
2fhn BNIAvidin-related protein 4/5 / 0.658
1ij8 BNIAvidin / 0.653