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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2rtp IMI Streptavidin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2rtp IMIStreptavidin / 1.031
2rto IMIStreptavidin / 1.023
2rtq IMIStreptavidin / 0.939
1nc9 IMIStreptavidin / 0.938
2rtr IMIStreptavidin / 0.930
2izj BTNStreptavidin / 0.905
2izh BTNStreptavidin / 0.894
2rtf BTNStreptavidin / 0.876
2rtg BTNStreptavidin / 0.876
3wzn BTNStreptavidin / 0.874
2izg BTNStreptavidin / 0.870
1n43 BTNStreptavidin / 0.868
2y3f BTNStreptavidin / 0.868
3ry2 BTNStreptavidin / 0.862
2rtd BTNStreptavidin / 0.861
2izi BTNStreptavidin / 0.858
1nqm BTNStreptavidin / 0.857
2izf BTNStreptavidin / 0.857
1mk5 BTNStreptavidin / 0.852
4gda BTNStreptavidin / 0.852
1i9h BNIStreptavidin / 0.848
2rte BTNStreptavidin / 0.847
3wyq BTNStreptavidin / 0.843
1df8 BTNStreptavidin / 0.839
1ndj BTNStreptavidin / 0.833
4dne DTBStreptavidin / 0.833
1swe BTNStreptavidin / 0.829
3wyp BSOStreptavidin / 0.828
2zsc BTNTamavidin2 / 0.825
2rtn IMIStreptavidin / 0.822
4yvb BTNStreptavidin / 0.820
4gd9 BTNStreptavidin / 0.814
1n9m BTNStreptavidin / 0.813
1luq BTNStreptavidin / 0.812
1swt BTNStreptavidin / 0.807
4bx7 B4FStreptavidin / 0.807
1lcw SHMStreptavidin / 0.806
1swr BTNStreptavidin / 0.803
1lcz BH7Streptavidin / 0.802
3rdo BTNStreptavidin / 0.802
2rtm IMIStreptavidin / 0.798
1stp BTNStreptavidin / 0.791
1swg BTNStreptavidin / 0.782
4z28 BTNHoefavidin / 0.782
2uyw BTNAvd protein / 0.781
3ew2 BTNHypothetical conserved protein / 0.781
1rxh BNIStreptavidin / 0.769
2fhl BNIAvidin-related protein 4/5 / 0.766
2fhn BNIAvidin-related protein 4/5 / 0.765
2rtl IMIStreptavidin / 0.751
4bcs BTNAvidin-related protein 4/5 / 0.750
1swp BTNStreptavidin / 0.745
2c4i BTNAvidin / 0.723
3t2w BTNAvidin/streptavidin / 0.718
1swp BTQStreptavidin / 0.717
4bj8 BTNAvidin / 0.712
1swn BTNStreptavidin / 0.709
3vhi VHIAvidin / 0.708
2avi BTNAvidin / 0.690
3rdq DTBStreptavidin / 0.689
1y52 BTNAvidin-related protein 4/5 / 0.670
2uz2 BTNAvd protein / 0.669
3vgw NVZAvidin / 0.665