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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2rtn IMI Streptavidin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2rtn IMIStreptavidin / 0.980
2rtr IMIStreptavidin / 0.915
2rtq IMIStreptavidin / 0.903
2izi BTNStreptavidin / 0.872
2rte BTNStreptavidin / 0.859
4yvb BTNStreptavidin / 0.855
1nc9 IMIStreptavidin / 0.839
2rtd BTNStreptavidin / 0.839
2izh BTNStreptavidin / 0.833
2rtf BTNStreptavidin / 0.823
3wyq BTNStreptavidin / 0.823
2rtp IMIStreptavidin / 0.822
3ry2 BTNStreptavidin / 0.813
2y3f BTNStreptavidin / 0.800
1luq BTNStreptavidin / 0.798
1swe BTNStreptavidin / 0.798
1df8 BTNStreptavidin / 0.793
2izf BTNStreptavidin / 0.790
3rdo BTNStreptavidin / 0.789
2izg BTNStreptavidin / 0.787
4bx7 B4FStreptavidin / 0.785
2rto IMIStreptavidin / 0.778
1nqm BTNStreptavidin / 0.775
1swt BTNStreptavidin / 0.766
1lcw SHMStreptavidin / 0.764
1swn BTNStreptavidin / 0.762
1n43 BTNStreptavidin / 0.757
3ew2 BTNHypothetical conserved protein / 0.753
2rtg BTNStreptavidin / 0.750
4gda BTNStreptavidin / 0.750
4gd9 BTNStreptavidin / 0.745
1n9m BTNStreptavidin / 0.744
1swp BTNStreptavidin / 0.740
3vhi VHIAvidin / 0.729
3rdq DTBStreptavidin / 0.727
3wzn BTNStreptavidin / 0.725
2uyw BTNAvd protein / 0.723
2zsc BTNTamavidin2 / 0.723
2jgs BTNAvidin / 0.714
4dne DTBStreptavidin / 0.714
2izj BTNStreptavidin / 0.711
1mk5 BTNStreptavidin / 0.706
1rxh BNIStreptavidin / 0.705
4z28 BTNHoefavidin / 0.704
1lcz BH7Streptavidin / 0.695
1y52 BTNAvidin-related protein 4/5 / 0.695
4bcs BTNAvidin-related protein 4/5 / 0.691
1swg BTNStreptavidin / 0.676
2avi BTNAvidin / 0.676
1ndj BTNStreptavidin / 0.672
2fhl BNIAvidin-related protein 4/5 / 0.670
2uz2 BTNAvd protein / 0.667
3wyp BSOStreptavidin / 0.659
2c4i BTNAvidin / 0.656
2rtm IMIStreptavidin / 0.655
2fhn BNIAvidin-related protein 4/5 / 0.653