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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2rtm IMI Streptavidin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2rtm IMIStreptavidin / 0.970
2rtl IMIStreptavidin / 0.882
1df8 BTNStreptavidin / 0.864
1luq BTNStreptavidin / 0.863
2izi BTNStreptavidin / 0.856
2rtq IMIStreptavidin / 0.856
1ndj BTNStreptavidin / 0.854
2izl IMIStreptavidin / 0.845
2y3f BTNStreptavidin / 0.844
1mk5 BTNStreptavidin / 0.843
1nqm BTNStreptavidin / 0.842
3wyp BSOStreptavidin / 0.839
3wzn BTNStreptavidin / 0.834
1n9m BTNStreptavidin / 0.832
3ry2 BTNStreptavidin / 0.832
2zsc BTNTamavidin2 / 0.829
1n43 BTNStreptavidin / 0.828
2rtr IMIStreptavidin / 0.826
2rte BTNStreptavidin / 0.825
4gd9 BTNStreptavidin / 0.820
1swg BTNStreptavidin / 0.819
3wyq BTNStreptavidin / 0.819
1rxj BNIStreptavidin / 0.818
4z28 BTNHoefavidin / 0.817
1i9h BNIStreptavidin / 0.816
1mep BTNStreptavidin / 0.808
1nc9 IMIStreptavidin / 0.808
4gda BTNStreptavidin / 0.804
4yvb BTNStreptavidin / 0.804
4bx7 B4FStreptavidin / 0.803
2izh BTNStreptavidin / 0.800
2rtp IMIStreptavidin / 0.798
2izf BTNStreptavidin / 0.794
2izj BTNStreptavidin / 0.794
2rtd BTNStreptavidin / 0.784
2rto IMIStreptavidin / 0.781
1swe BTNStreptavidin / 0.780
1lcz BH7Streptavidin / 0.774
3rdq DTBStreptavidin / 0.771
1swt BTNStreptavidin / 0.766
3rdo BTNStreptavidin / 0.766
1lcw SHMStreptavidin / 0.764
2uyw BTNAvd protein / 0.749
2fhl BNIAvidin-related protein 4/5 / 0.746
2fhn BNIAvidin-related protein 4/5 / 0.746
1swr BTNStreptavidin / 0.744
3ew2 BTNHypothetical conserved protein / 0.744
3t2w BTNAvidin/streptavidin / 0.740
1swn BTNStreptavidin / 0.736
1y52 BTNAvidin-related protein 4/5 / 0.735
1stp BTNStreptavidin / 0.734
4dne DTBStreptavidin / 0.728
4bj8 BTNAvidin / 0.722
4bcs BTNAvidin-related protein 4/5 / 0.719
1swd BTNStreptavidin / 0.714
1ij8 BNIAvidin / 0.687
1swp BTNStreptavidin / 0.683
1rxh BNIStreptavidin / 0.671
5ag5 MYAGlycylpeptide N-tetradecanoyltransferase / 0.665
4a2z MYAGlycylpeptide N-tetradecanoyltransferase / 0.661
4c2z MYAGlycylpeptide N-tetradecanoyltransferase 1 / 0.660
5a27 MYAGlycylpeptide N-tetradecanoyltransferase / 0.660
2rtn IMIStreptavidin / 0.655